translateBuild {TCGAutils}R Documentation

Utilities for working with build numbers

Description

A few functions are available to search for build versions, either from NCBI or UCSC.

Usage

translateBuild(from, to = "UCSC")

extractBuild(string, build = c("UCSC", "NCBI"))

uniformBuilds(builds, cutoff = 0.2)

Arguments

from

A build version name

to

The name of the desired version

string

A single character string

build

A vector of build version names (default UCSC, NCBI)

builds

A character vector of builds

cutoff

A threshold value for translating builds below the threshold

Examples


translateBuild("GRCh35", "UCSC")


extractBuild(
"SCENA_p_TCGAb29and30_SNP_N_GenomeWideSNP_6_G05_569110.nocnv_grch38.seg.txt"
)


buildvec <- rep(c("GRCh37", "hg19"), times = c(5, 1))
uniformBuilds(buildvec)


[Package TCGAutils version 1.4.0 Index]