GDCquery_clinic {TCGAbiolinks}R Documentation

Get GDC clinical data

Description

GDCquery_clinic will download all clinical information from the API as the one with using the button from each project

Usage

GDCquery_clinic(project, type = "clinical", save.csv = FALSE)

Arguments

project

A valid project (see list with getGDCprojects()$project_id)]

type

A valid type. Options "clinical", "Biospecimen" (see list with getGDCprojects()$project_id)]

save.csv

Write clinical information into a csv document

Value

A data frame with the clinical information

Examples

clin <- GDCquery_clinic("TCGA-ACC", type = "clinical", save.csv = TRUE)
clin <- GDCquery_clinic("TCGA-ACC", type = "biospecimen", save.csv = TRUE)

[Package TCGAbiolinks version 2.12.6 Index]