match_ac {Starr} | R Documentation |
The Algorithm is designed to match a given set of sequences to a text. This function is used by remap for mapping reporter sequences to the genome.
match_ac(dictionary, text, complementary=FALSE, reverse=FALSE, reverse_complementary=FALSE, nseq)
dictionary |
Set of sequences, given as a character vector |
text |
At least one text, to match the sequences to. |
complementary |
If TRUE, the sequences are searched in the complementary strand of the text |
reverse |
If TRUE, the sequences are searched in the reverse strand of the text |
reverse_complementary |
If TRUE, the sequences are searched in the reverse complementary strand of the text |
nseq |
number of sequences to search in one run |
Benedikt Zacher zacher@lmb.uni-muenchen.de