plotPosBias {Starr} | R Documentation |
plotPosBias
generates a plot showing the bias of hybridzation, depending on base position in sequence.
plotPosBias(intensity, sequence, main="", ylim)
intensity |
a vector of type numeric, containing the measured intensities |
sequence |
a vector of type character, containing the sequneces |
main |
head of the plot |
ylim |
ylim of plot |
Benedikt Zacher zacher@lmb.uni-muenchen.de
## sequence <- unlist(lapply(1:50000, function(x) {paste(sample(c("A","T","C","G"),prob=c(0.3,0.3,0.2,0.2),25,replace=TRUE), collapse="")})) values <- runif(50000,min=-2,max=2) plotPosBias(values, sequence)