GE_matrix {StarBioTrek} | R Documentation |
GE_matrix creates a list of gene expression for pathways given by the user.
GE_matrix(DataMatrix, genes.by.pathway)
DataMatrix |
gene expression matrix (eg.TCGA data) |
genes.by.pathway |
a list of pathway data as provided by GetData and ConvertedID_genes |
a list for each pathway ( gene expression level belong to that pathway)
list_path_gene<-GE_matrix(DataMatrix=tumo[,1:2],genes.by.pathway=pathway[1:5])