estiExonNBstat {SeqGSEA} | R Documentation |
Calculate NB-statistics quantifying differential splicing for individual exons between two groups of samples compared.
estiExonNBstat(RCS)
RCS |
a ReadCountSet object after running |
A ReadCountSet object with the slot featureData
updated.
Please run exonTestability
before you run this function.
Xi Wang, xi.wang@newcastle.edu.au
Weichen Wang, Zhiyi Qin, Zhixing Feng, Xi Wang and Xuegong Zhang (2013). Identifying differentially spliced genes from two groups of RNA-seq samples. Gene, 518(1):164-170.
exonTestability
,
estiGeneNBstat
data(RCS_example, package="SeqGSEA") RCS_example <- exonTestability(RCS_example, cutoff=5) RCS_example <- estiExonNBstat(RCS_example) head(fData(RCS_example))