calES {SeqGSEA} | R Documentation |
This is an internal function to calculate running enrichment scores of each gene set in the SeqGeneSet object specified
calES(gene.set, gene.score, weighted.type = 1)
gene.set |
a SeqGeneSet object. |
gene.score |
a vector of gene scores corresponding to the |
weighted.type |
gene score weight type. |
Xi Wang, xi.wang@newcastle.edu.au
data(DEscore, package="SeqGSEA") data(DSscore, package="SeqGSEA") gene.score <- geneScore(DEscore, DSscore, method="linear", DEweight = 0.3) data(GS_example, package="SeqGSEA") rES <- calES(GS_example, gene.score) rES[1,]