CIMLR_Estimate_Number_of_Clusters {SIMLR}R Documentation

please refer to https://github.com/danro9685/CIMLR

Description

estimate the number of clusters by means of two huristics as discussed in the CIMLR paper

Usage

CIMLR_Estimate_Number_of_Clusters(all_data, NUMC = 2:5,
  cores.ratio = 1)

Arguments

all_data

is a list of multi-omic data each of which is an (m x n) data matrix of measurements of cancer patients

NUMC

vector of number of clusters to be considered

cores.ratio

ratio of the number of cores to be used when computing the multi-kernel

Value

a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR


[Package SIMLR version 1.10.0 Index]