CIMLR_Estimate_Number_of_Clusters {SIMLR} | R Documentation |
estimate the number of clusters by means of two huristics as discussed in the CIMLR paper
CIMLR_Estimate_Number_of_Clusters(all_data, NUMC = 2:5, cores.ratio = 1)
all_data |
is a list of multi-omic data each of which is an (m x n) data matrix of measurements of cancer patients |
NUMC |
vector of number of clusters to be considered |
cores.ratio |
ratio of the number of cores to be used when computing the multi-kernel |
a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR