tni.replace.samples {RTN}R Documentation

Entry point to assess new samples with previously calculated regulons.

Description

This function replaces samples of an existing TNI-class objects.

Usage

tni.replace.samples(object, expData, rowAnnotation=NULL, colAnnotation=NULL, verbose=TRUE)

Arguments

object

an object of class TNI-class.

expData

a gene expression matrix or 'SummarizedExperiment' object.

rowAnnotation

an optional data frame with gene annotation. Column 1 must provide all ids listed in the gene expression matrix.

colAnnotation

an optional data frame with sample annotation.

verbose

a single logical value specifying to display detailed messages (when verbose=TRUE) or not (when verbose=FALSE).

Author(s)

Mauro Castro

Examples


## please the package's vignette

[Package RTN version 2.8.5 Index]