getCNGECorrelation {RTCGAToolbox}R Documentation

Perform correlation analysis betwwen gene expression and copy number data

Description

getCNGECorrelation returns a list that stores the results correlation between gene expression and copy number data.

Usage

getCNGECorrelation(dataObject, adj.method = "BH", adj.pval = 0.05,
  raw.pval = 0.05)

Arguments

dataObject

This must be FirehoseData object.

adj.method

Raw p value adjustment methods (Default "BH")

adj.pval

Adjusted p value cut off for results table (Default 0.05)

raw.pval

raw p value cut off for results table (Default 0.05)

Value

Returns a list that stores results for each dataset

Examples

data(RTCGASample)
corRes <- getCNGECorrelation(RTCGASample)
corRes
showResults(corRes[[1]])

[Package RTCGAToolbox version 2.14.0 Index]