R4RNA-package {R4RNA} | R Documentation |
An R package for RNA visualization and analysis
# Read input data predicted <- readHelix(system.file("extdata", "helix.txt", package = "R4RNA")) known <- readVienna(system.file("extdata", "vienna.txt", package = "R4RNA")) sequence <- as.character(readBStringSet(system.file("extdata", "fasta.txt", package = "R4RNA"))) plotHelix(predicted) pval.coloured <- colourByValue(predicted, log = TRUE, get = TRUE) plotDoubleHelix(pval.coloured, known, scale = FALSE) plotOverlapHelix(pval.coloured, known) cov.coloured <- colourByCovariation(known, sequence, get = TRUE) plotCovariance(sequence, cov.coloured) plotDoubleCovariance(cov.coloured, pval.coloured, sequence, conflict.filter = "grey") plotOverlapCovariance(pval.coloured, known, sequence, grid = TRUE, conflict.filter = "grey", legend = FALSE, any = TRUE) # List of all functions ls("package:R4RNA") # use example() and help() for more details on each function