createServer-methods {R3CPET} | R Documentation |
To facilitate the interaction of the user with the package, we added an additional web interface using the shiny package. The user can check some basic statistics about the row data and he can explore the results and generate some graphs.
## S4 method for signature ## 'ChiapetExperimentData,NetworkCollection,ChromMaintainers' createServer(x,nets,hlda)
x |
a |
nets |
a |
hlda |
a |
A webpage is opened.
Mohamed Nadhir Djekidel (nde12@mails.tsinghua.edu.cn)
NetworkCollection
, ChiapetExperimentData
, ChromMaintainers
## get the different datasets path petFile <- file.path(system.file("example",package="R3CPET"),"HepG2_interactions.txt") tfbsFile <- file.path(system.file("example",package="R3CPET"),"HepG2_TF.txt.gz") ## Not run: data(RPKMS) x <- ChiapetExperimentData(pet = petFile, tfbs= tfbsFile, IsBed = FALSE, ppiType="HPRD", filter= TRUE) ## build the diffrent indexes x <- createIndexes(x) ## build networks connecting each interacting regions nets<- buildNetworks(x) ## infer the networks and do the clustering hlda<- InferNetworks(nets) hlda<- clusterInteractions(hlda) ## Run the server createServer(x, nets, hlda) ## End(Not run)