results {OUTRIDER} | R Documentation |
This function assembles a results table of significant outlier events based on the given filter criteria. The table contains various information accumulated over the analysis pipeline.
results(object, ...) ## S4 method for signature 'OutriderDataSet' results(object, padjCutoff = 0.05, zScoreCutoff = 0, round = 2, all = FALSE, ...)
object |
An OutriderDataSet |
... |
Additional arguments, currently not used |
padjCutoff |
The significant theshold to be applied |
zScoreCutoff |
If provided additionally a z score threashold is applied |
round |
Can be TRUE, defaults to 2, or an integer used for rounding
with |
all |
By default FALSE, only significant read counts are listed in the results. If TRUE all results are assembled resulting in a data.table of length samples x genes |
A data.table where each row is an outlier event and the columns contain additional information about this event. Eg padj, l2fc
ods <- makeExampleOutriderDataSet() ods <- OUTRIDER(ods) res <- results(ods, all=TRUE) res