aberrant {OUTRIDER} | R Documentation |
Identifies the aberrant events and returns the number of aberrant counts per gene or sample or returns a matrix indicating aberrant events.
aberrant(ods, padjCutoff = 0.05, zScoreCutoff = 0, by = c("none", "sample", "gene"))
ods |
An OutriderDataSet object |
padjCutoff |
The padjust cutoff |
zScoreCutoff |
The absolute Z-score cutoff, if NA or NULL no Z-score cutoff is used |
by |
if the results should be summarized by 'sample', 'gene' or not at all (default). |
The number of aberrent events by gene or sample or a TRUE/FALSE matrix of the size sample x gene of aberrent events.
ods <- makeExampleOutriderDataSet() ods <- OUTRIDER(ods, implementation='pca') aberrant(ods)[1:10,1:10] tail(sort(aberrant(ods, by="sample"))) tail(sort(aberrant(ods, by="gene")))