setupRawContrastObject {NormalyzerDE} | R Documentation |
Prepare SummarizedExperiment object for statistics data
setupRawContrastObject(dataPath, designPath, sampleColName)
dataPath |
Path to raw data matrix |
designPath |
Path to design matrix |
sampleColName |
Name for column in design matrix containing sample names |
experimentObj Prepared instance of SummarizedExperiment
data_path <- system.file(package="NormalyzerDE", "extdata", "tiny_data.tsv") design_path <- system.file(package="NormalyzerDE", "extdata", "tiny_design.tsv") sumExpObj <- setupRawContrastObject(data_path, design_path, "sample")