densityPlot {NanoStringQCPro}R Documentation

densityPlot

Description

Plot the density of counts for all endogenous and housekeeping genes for each sample in an RccSet object

Usage

densityPlot(M, log.transform = FALSE, pdata, covar, ...)

Arguments

M

One of the matrices from the assayData() of an RccSet object (make sure to set the log.transform parameter accordingly)

log.transform

Scalar boolean

pdata

pData() of the RccSet object

covar

character; colname in pData() that can be used to label genes by a category of interest (passed on to colByCovar)

...

additional plotting parameters

Value

A density plot

Author(s)

Dorothee Nickles


[Package NanoStringQCPro version 1.16.0 Index]