occurences {MotIV} | R Documentation |
Get the number of motifs occurences and co-occurences from a rGADEM
object.
occurences(gadem) cooccurences(x)
gadem |
An object of type |
x |
A contingency table. |
occurences
returns the contingency table of the number of motifs per sequences.
This object can be put in cooccurences
to return the number of sequences where two motifs appear together.
Eloi Mercier <emercier@chibi.ubc.ca>
data("FOXA1_rGADEM") oc <- occurences (gadem) coc <- cooccurences (oc) coc