Preprocess_CancerSite_Methylation27k {MethylMix}R Documentation

The Preprocess_CancerSite_Methylation27k function

Description

Internal. Pre-processes DNA methylation data from TCGA from Illymina 27k arrays.

Usage

Preprocess_CancerSite_Methylation27k(CancerSite, METdirectory,
  MissingValueThreshold = 0.2)

Arguments

CancerSite

character of length 1 with TCGA cancer code.

METdirectory

character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function.

MissingValueThreshold

threshold for removing samples or genes with missing values.

Value

List with pre processed methylation data for cancer and normal samples.


[Package MethylMix version 2.14.0 Index]