TCGA_Load_MolecularData {MethylMix}R Documentation

The TCGA_Load_MolecularData function

Description

Internal. Reads in gene expressiondata. Deletes samples and genes with more NAs than the respective thresholds. Imputes other NAs values.

Usage

TCGA_Load_MolecularData(Filename, MissingValueThresholdGene = 0.3,
  MissingValueThresholdSample = 0.1)

Arguments

Filename

name of the file with the data.

MissingValueThresholdGene

threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.

MissingValueThresholdSample

threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.

Value

gene expression data.


[Package MethylMix version 2.14.0 Index]