binarise_files {Melissa}R Documentation

Binarise CpG sites

Description

Script for binarising CpG sites and formatting the coverage file so it can be directly used from the BPRMeth package. The format of each file is the following: <chr> <start> <met_level>, where met_level can be either 0 or 1.

Usage

binarise_files(indir, outdir = NULL, no_cores = NULL)

Arguments

indir

Directory containing the coverage files, output from Bismark.

outdir

Directory to store the output files for each cell with exactly the same name. If NULL, then a directory called 'binarised' inside 'indir' will be create by default.

no_cores

Number of cores to use for parallel processing. If NULL, no parallel processing is used.

Value

No value is returned, the binarised data are stored in the outdir.

Author(s)

C.A.Kapourani C.A.Kapourani@ed.ac.uk

See Also

create_melissa_data_obj, melissa, filter_regions

Examples

## Not run: 
# Met directory
met_dir <- "name_of_met_dir"

binarise_files(met_dir)

## End(Not run)


[Package Melissa version 1.0.0 Index]