gsGetter {MAGeCKFlute} | R Documentation |
Extract pathway annotation from GMT file.
gsGetter(gmtpath = NA, type = "All", limit = c(0, Inf), organism = "hsa")
gmtpath |
The path to customized gmt file. |
type |
Geneset category for testing. |
limit |
A two-length vector (default: c(3, 50)), specifying the minimal and maximal size of gene sets for enrichent analysis. |
organism |
'hsa' or 'mmu'. |
A three-column data frame.
Wubing Zhang
gene2path = gsGetter() head(gene2path)