evalLogLikGene {LineagePulse} | R Documentation |
Chooses whether to evaluate ZINB or NB model based on input.
evalLogLikGene(vecCounts, vecMu, vecNormConst, vecDisp, vecPi, vecidxNotZero, vecidxZero)
vecCounts |
(count vector number of cells) Observed read counts, not observed are NA. |
vecMu |
(numeric vector number of cells) Negative binomial mean parameter. |
vecNormConst |
(numeric vector number of cells) Model scaling factors, one per cell. |
vecDisp |
(numeric vector number of cells) Negative binomial dispersion parameters. |
vecPi |
(probability vector number of cells) Drop-out rate estimates. Set to NULL to evaluate NB likelihood. |
vecidxNotZero |
(bool vector number of cells) Whether observation is larger than zero. |
vecidxZero |
(bool vector number of cells) Whether observation is zero. |
scaLogLik (scalar) Likelihood under zero-inflated negative binomial model.
David Sebastian Fischer