unionRefTr {IntEREst} | R Documentation |
Performs union on the overlapping introns/exons so that the final merged transcripts would feature from each exon or intron, one copy.
unionRefTr( referenceChr, referenceBegin, referenceEnd, referenceTr, referenceIntronExon, intronExon="exon", silent=FALSE)
referenceChr |
Chromosome names of the references (e.g. introns). |
referenceBegin |
A vector that corresponds to the begin coordinates of the reference. |
referenceEnd |
A vector that corresponds to the end coordinates of the reference. |
referenceTr |
A character vector that includes transcription IDs. |
referenceIntronExon |
A vector with the same size as the |
intronExon |
Should be assigned either |
silent |
Whether run silently. |
Data frame containing merged transcripts structure. The merged transcripts feature from each intron or exon, one copy ONLY.
Ali Oghabian
unU12Ex<-unionRefTr( referenceChr=u12[1:94,"chr"], referenceBegin=u12[1:94,"begin"], referenceEnd=u12[1:94,"end"], referenceTr=u12[1:94,"trans_name"], referenceIntronExon=u12[1:94,"int_ex"], intronExon="exon", silent=TRUE) unU12Int<-unionRefTr( referenceChr=u12[1:94,"chr"], referenceBegin=u12[1:94,"begin"], referenceEnd=u12[1:94,"end"], referenceTr=u12[1:94,"trans_name"], referenceIntronExon=u12[1:94,"int_ex"], intronExon="intron", silent=TRUE) unU12IntEx<-unionRefTr( referenceChr=u12[1:94,"chr"], referenceBegin=u12[1:94,"begin"], referenceEnd=u12[1:94,"end"], referenceTr=u12[1:94,"trans_name"], referenceIntronExon=u12[1:94,"int_ex"], intronExon=c("intron","exon"), silent=TRUE)