DataFilter$removeNASeries {IdMappingAnalysis} | R Documentation |
Remove NA series from the experiment set.
## Static method (use this): ## DataFilter$removeNASeries(experimentSet, byRows=TRUE, verbose=FALSE, ...) ## Don't use the below: ## S3 method for class 'DataFilter' removeNASeries(static, experimentSet, byRows=TRUE, verbose=FALSE, ...)
experimentSet |
|
byRows |
|
verbose |
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... |
Not used |
The experiment data.frame
with rows or columns containing all NA
's removed.
Alex Lisovich, Roger Day
For more information see DataFilter
.
#set to NA protein count rows which average count is less than 50 percent fltExperimentSet<-DataFilter$do.apply(examples$msmsExperimentSet, byRows=TRUE,filterFun=DataFilter$minAvgCountConstraint,filtParams=0.5,verbose=TRUE); #remove NA series fltExperimentSet<-DataFilter$removeNASeries(fltExperimentSet,byRows=TRUE,verbose=TRUE); dim(fltExperimentSet);