getZygosities {IMPCdata} | R Documentation |
Returns the list of zygosities (homozygous, heterozygous and hemizygous) for mice that were measured for a gene/allele for a specificed combination of parameter, procedure, pipeline and phenotyping center.
getZygosities(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,ParameterID=NULL, StrainID=NULL,GeneID=NULL, AlleleID=NULL)
PhenCenterName |
IMPC phenotyping center; mandatory argument |
PipelineID |
IMPC pipeline ID; mandatory argument |
ProcedureID |
IMPC procedure ID; mandatory argument |
ParameterID |
IMPC parameter ID; mandatory argument |
StrainID |
IMPC strain ID; optional argument |
GeneID |
IMPC gene ID; optional argument |
AlleleID |
IMPC allele ID; optional argument |
Returns the list of IMPC genes (IDS of genes) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.
Natalja Kurbatova, Jeremy Mason
listZygosities <- getZygosities("WTSI","MGP_001","IMPC_CBC_001","IMPC_CBC_003_001",GeneID="MGI:1194894") for (zygosityIndex in 1:length(listZygosities)) { print(listZygosities[zygosityIndex]) }