getKaryotype-methods {GreyListChIP} | R Documentation |
GreyList
objectThough a BSgenome
object (or a karyotype file) is
supplied when the
GreyList
object is created, it is conceivable that
the user might want to replace it. This method allows that.
getKaryotype(obj, genome, tileSize=1024)
obj |
A |
genome |
A |
tileSize |
The size in nucleotides of each tile. Overlapping tiles will be generated, spaced at 1/2 the width of the tiles. |
Returns the GreyList
object with a new genome and
tiling.
Gord Brown
# Load a pre-built GreyList objct. data(greyList) library(BSgenome.Hsapiens.UCSC.hg19) # Replace the karyotype, updating the genome tiling. ## Not run: gl <- getKaryotype(gl,BSgenome.Hsapiens.UCSC.hg19)