makeGreyList-methods {GreyListChIP} | R Documentation |
GreyList
objectCreate the actual grey list, based on the threshold calculated by
calcThreshold
and the read counts from countReads
.
makeGreyList(obj,maxGap=16384)
obj |
The |
maxGap |
If the distance between neighbouring grey regions is less than
or equal to |
Create the grey list as a GRanges
object. Merge grey
regions if they are separated by up to maxGap
bp.
The modified GreyList
, with the regions added.
Gord Brown
# load a pre-built GreyList object: data(greyList) # calculate the actual regions: gl <- makeGreyList(gl)