MutationAnnotationFormat_v1.0-class {GenVisR}R Documentation

Class MutationAnnotationFormat_v1.0

Description

An S4 class to represent data in mutation annotation format version 1.0, inherits from the MutationAnnotationFormat_Virtual class.

Usage

MutationAnnotationFormat_v1.0(mafData)

Arguments

mafData

data.table object containing a maf file conforming to the version 1.0 specification.

Slots

position

data.table object containing column names "Chromosome", "Start_Position", "End_Position, "Strand".

mutation

data.table object containing column names "Variant_Classification", "Variant_Type", "Reference_Allele", "Tumor_Seq_Allele1", "Tumor_Seq_Allele2".

sample

data.table object containing columns names "Tumor_Sample_Barcode".

meta

data.table object containing meta data.


[Package GenVisR version 1.16.1 Index]