GWASTools-defunct {GWASTools} | R Documentation |
These functions are defunct and no longer available.
The following functions are defunct; use the replacement indicated below:
pedigreeClean
: pedigreeCheck
pedigreeFindDuplicates
: pedigreeCheck
ncdfCreate
: createDataFile
ncdfAddData
: createDataFile
ncdfAddIntensity
: createAffyIntensityFile
ncdfCheckGenotype
: checkGenotypeFile
ncdfCheckIntensity
: checkIntensityFile
ncdfSetMissingGenotypes
: setMissingGenotypes
gdsSetMissingGenotypes
: setMissingGenotypes
ncdfImputedDosage
: imputedDosageFile
gdsImputedDosage
: imputedDosageFile
gdsCheckImputedDosage
: checkImputedDosageFile
assocTestRegression
: assocRegression
assocTestCPH
: assocCoxPH
assocTestFisherExact
: batchFisherTest
gwasExactHW
: exactHWE
ncdfSubset
: gdsSubset
ncdfSubsetCheck
: gdsSubsetCheck
plinkToNcdf
: snpgdsBED2GDS
convertVcfGds
: snpgdsVCF2GDS