fantom_download {GAPGOM} | R Documentation |
Downloads and unpacks fantom5 data of either human or mouse.
fantom_download(organism = "human", unpack = TRUE, noprompt = FALSE)
organism |
Either "mouse" or "human". FANTOM5 only has these two as fully annotated+tpm normalized datasets. |
unpack |
Default=TRUE, if set to TRUE, file will be unpacked automatically. |
noprompt |
Default=FALSE, user prompt, if you are 100 download and have enough space, set this to TRUE. |
This function downloads the whole fantom5 dataset and unpacks it. automatic unpacking can be turned off. The file is downloaded to a special caching directory, which will be returned on exit.
The resulting filename/location of the file or NULL if cancelled.
fantom_file <- fantom_download(organism = "mouse", noprompt = TRUE)