seqToGeneGroup {FindMyFriends}R Documentation

Get gene-to-genegroup relationship

Description

This method returns the group membership for each gene in the pangenome as a vector of indices. Element 1 corresponds to gene 1 and the value is the index of the corresponding gene group. If gene groups have yet to be defined it returns a vector of length 0.

Usage

seqToGeneGroup(object)

## S4 method for signature 'pgInMem'
seqToGeneGroup(object)

Arguments

object

A pgVirtual subclass

Value

An integer vector with an element for each gene in the pangenome.

Methods (by class)

Note

Required for extending the class system of FindMyFriends

See Also

seqToOrg for gene-to-organism relationship

Examples

testPG <- .loadPgExample(withGroups=TRUE)

# Have a look at what the first six genes belongs to
head(seqToGeneGroup(testPG))


[Package FindMyFriends version 1.14.0 Index]