LikefunNBHMM {EBSeqHMM} | R Documentation |
Likelihood function of the Beta-Negative Binomial HMM Model
LikefunNBHMM(ParamPool, InputPool)
ParamPool |
The parameters that will be estimated in EM. |
InputPool |
The control parameters that will not be estimated in EM |
The likelihood function of the Beta-Negative Binomial HMM model used in EBSeqHMM. EBSeqHMM uses optim() function to obtain the optimal estimates that minimizes the likelihood.
optimal estimates of the parameters of interest
Ning Leng
data(GeneExampleData) tmp <- GeneExampleData[1:10,] In <- list(tmp,1,5,10,3,tmp,rep(1,15),as.factor(rep(1:5,each=3)), 10,cbind(rep(.5,10),rep(1,10),rep(2,10))) Start <- c(1,1) LikefunNBHMM(Start,In)