PlotExp {EBSeqHMM} | R Documentation |
Plot expression of a single gene
PlotExp(NormalizedData, Conditions, Name)
NormalizedData |
Expression data after adjusting for library size factors |
Conditions |
sample conditions |
Name |
name of the gene/isoform of interest |
PlotExp() function will generate line plots for genes or isoforms of interest.
PlotExp() funtion will generate line plots for genes or isoforms of interest.
Ning Leng
data(GeneExampleData) CondVector <- rep(paste("t",1:5,sep=""),each=3) Conditions <- factor(CondVector, levels=c("t1","t2","t3","t4","t5")) Sizes <- MedianNorm(GeneExampleData) NormData <- GetNormalizedMat(GeneExampleData, Sizes) PlotExp(NormData, Conditions, "Gene_1")