deepblue_list_biosources {DeepBlueR}R Documentation

list_biosources

Description

List BioSources included in DeepBlue. A BioSource refers to a term describing the origin of a given sample, such as a tissue or cell line. It is possible to filter the BioSources by their extra_metadata fields content. These fields vary depending on the original data source.

Usage

deepblue_list_biosources(extra_metadata = NULL,
  user_key = deepblue_options("user_key"))

Arguments

extra_metadata

- A struct (Metadata that must be matched)

user_key

- A string (users token key)

Value

biosources - A array (biosources names and IDS)

See Also

Other Inserting and listing biosources: deepblue_list_similar_biosources

Examples

deepblue_list_biosources(extra_metadata = list(ontology_id = "UBERON:0002485"))


[Package DeepBlueR version 1.10.0 Index]