genome.summary.plots {DOQTL} | R Documentation |
These plots show summaries of the founder haplotype proportions across SNPs or samples.
genotype.by.sample.barplot(results) genotype.by.snp.barplot(results, snps)
results |
Data.frame as produced by |
snps |
Data.frame containing the marker locations. SNP ID, chromosome, Mb anc cM locations in columns 1 through 4, respectively. |
Barplots across samples or SNPs are produced from the relevant summary files. This is intended to be run after DO genomes have been reconstructed for a large set of samples to verify that founder allele frequencies are consistent across SNPs and samples.
Daniel Gatti
summarize.by.snps
, summarize.by.samples
## Not run: load(url("ftp://ftp.jax.org/MUGA/muga_snps.Rdata")) results = summarize.by.samples(path = ".", snps = muga_snps) genotype.by.sample.barplot(results) ## End(Not run)