get.sig.thr {DOQTL} | R Documentation |
Given a set of permutations, return the significance thresholds on the autosomes and X chromosome.
get.sig.thr(perms, alpha = 0.05, Xchr = TRUE)
perms |
Numeric matrix with the maximum LOD (or maximum -log10(p-value)) from each permuation. |
alpha |
Numeric vector containing the alpha level of the significance thresholds. |
Xchr |
Logical value (default = TRUE) that indicates that the permutations contain both autosomal and X chromosome thresholds. |
Numeric matrix containing the significance thresholds for the autosomes in column 1 an dthe X chromossome in column 2.
Daniel Gatti
The X chromosome in quantitative trait locus mapping. Broman KW, Sen S, Owens SE, Manichaikul A, Southard-Smith EM, Churchill GA. Genetics. 2006 Dec;174(4):2151-8.
## Not run: perms = scanone.perm(pheno = pheno, probs = probs, addcovar = addcovar, snps = anps) get.sig.thr(perms) ## End(Not run)