getFJWSubsetIndices {CytoML}R Documentation

Fetch the indices for a subset of samples in a flowJo workspace, based on a keyword value pair

Description

This function will calculate the indices of a subset of samples in a flowJoWorkspace, based on a keyword/value filter. It is applied to a specific group of samples in the workspace. The output is meant to be passed to the subset= argument of parseWorkspace.

Usage

getFJWSubsetIndices(ws, key = NULL, value = NULL, group,
  requiregates = TRUE)

Arguments

ws

flowJoWorkspace object

key

character The name of the keyword.

value

character The value of the keyword.

group

numeric The group of samples to subset.

requiregates

TRUE or FALSE, specifying whether we include only samples that have gates attached or whether we include any sample in the workspace.

Details

Returns an index vector into the samples in a flowJo workspace for use with parseWorkspace(subset=), based on a keyword/value filter in a specific group of samples.

Value

A numeric vector of indices.

See Also

parseWorkspace


[Package CytoML version 1.10.0 Index]