read.gatingML.cytobank {CytoML} | R Documentation |
The Default parser (flowUtils::read.gatingML) does not parse the population tree as well as the custom information from cytobank. (e.g. gate name, fcs filename).
read.gatingML.cytobank(file, ...)
file |
Gating-ML XML file |
... |
additional arguments passed to the handlers of 'xmlTreeParse' |
a graphGML that represents the population tree. The gate and population name are stored in nodeData of each node. Compensation and transformations are stored in graphData.
## Not run: xml <- system.file("extdata/cytotrol_tcell_cytobank.xml", package = "CytoML") g <- read.gatingML.cytobank(xml) #parse the population tree #plot(g) #visualize it ## End(Not run)