biCkaksCodon-class {CorMut} | R Documentation |
biCkaksCodon/biCkaksAA/biMICodon/biMIAA class for representing seqFormt result of two conditions
seq_formated
:Object of class "DNAStringSet"
. The result of seqFormt for the first condition
seq_formated02
:Object of class "DNAStringSet"
. The result of seqFormt for the second condition
signature(object = "biCkaksCodon")
: Compare the correlated mutations(in the unit of codon) between two conditions using condition kaks method.
signature(object = "biCkaksAA")
: Compare the correlated mutations(in the unit of amino) between two conditions using condition kaks method.
signature(object = "biMICodon")
: Compare the correlated mutations(in the unit of codon) between two conditions using mutual information method.
signature(object = "biMIAA")
: Compare the correlated mutations(in the unit of amino) between two conditions using mutual information method.
#examplefile=system.file("extdata","PI_treatment_naive.aln",package="CorMut") #examplefile02=system.file("extdata","PI_treatment.aln",package="CorMut") #seq_formated=seqFormat(examplefile) #seq_formated02=seqFormat(examplefile02) #biexample=biCkaksAA(seq_formated,seq_formated02)