boundMolecules {ChIPanalyser} | R Documentation |
boundMolecules
slot in
occupancyProfileParameters
object.
Extract or Access boundMolecules
slot in
occupancyProfileParameters
object.
boundMolecules(object)
object |
|
Defaut value: 1000
When computing occupancy (computeOccupancy
), a value for the
number of bound Molecules to DNA is needed.
This value can be updated and set in a
occupancyProfileParameters
object.
If the number of molecules is unknown,it is possible to infer this value with
computeOptimal
.
We strongly encourage to set values when building a
occupancyProfileParameters
object.
Returns boundMolecules
slot in
occupancyProfileParameters
object.
Patrick C.N. Martin <pm16057@essex.ac.uk>
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
# Building occupancyProfileParameters object OPP <- occupancyProfileParameters() #Checking single value by slot accessor boundMolecules(OPP)