spikeSummary {ChIPSeqSpike} | R Documentation |
Output a table giving endogenous/exogenous scaling scores and read counts for each experiment contained in a dataset
spikeSummary(theObject) ## S4 method for signature 'Experiment' spikeSummary(theObject) ## S4 method for signature 'ExperimentLoaded' spikeSummary(theObject) ## S4 method for signature 'ChIPSeqSpikeDataset' spikeSummary(theObject) ## S4 method for signature 'ChIPSeqSpikeDatasetList' spikeSummary(theObject) ## S4 method for signature 'ChIPSeqSpikeDatasetBoost' spikeSummary(theObject) ## S4 method for signature 'ChIPSeqSpikeDatasetListBoost' spikeSummary(theObject)
theObject |
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The rows represent an experiment (with corresponding input below) and the columns represent the endogenous scaling factor (endoScalFact), the exogenous scaling factor (exoScalFact), the number of reads aligned to the reference genome (endoCount) and the number of reads aligned to the exogenous genome (exoCount).
a matrix of information about each experiment
Experiment
: Method for signature theObject = 'Experiment'
ExperimentLoaded
: Method for signature theObject =
'ExperimentLoaded'
ChIPSeqSpikeDataset
: Method for signature theObject=
'ChIPSeqSpikeDataset'
ChIPSeqSpikeDatasetBoost
: Method for signature theObject=
'ChIPSeqSpikeDatasetBoost'
ChIPSeqSpikeDatasetList
: Method for signature theObject=
'ChIPSeqSpikeDatasetList'
ChIPSeqSpikeDatasetListBoost
: Method for signature theObject=
'ChIPSeqSpikeDatasetListBoost'
Nicolas Descostes
data("result_estimateScalingFactors") spikeSummary(csds)