PopulateTheThreeByThreeContingencyTable {CausalR}R Documentation

populate the three-by-three contingency table

Description

Populates 3x3 signed contingency table of expected versus observed changes. Given the values of n++, n+-, n-+ and n–, calculates n0+, n0-, n+0, n-0 and n00. Notation from Chindelevitch et al. Causal reasoning on biological networks Bioinformatics (2012) paper.

Usage

PopulateTheThreeByThreeContingencyTable(n_pp, n_pm, n_mp, n_mm,
  predictionDataStats, experimentalDataStats)

Arguments

n_pp

n++ contingency table entry

n_pm

n+- contingency table entry

n_mp

n-+ contingency table entry

n_mm

n– contingency table entry

predictionDataStats

a prediction data table.

experimentalDataStats

an experimental data table

Value

Vector of calculated values for n0+, n0-, n+0, n-0 and n00 - See: Chindelevitch et al.Bioinformatics (2012).


[Package CausalR version 1.16.0 Index]