copyNumber {CNPBayes} | R Documentation |
Extract copy number estimates from a 'CopyNumberModel'
copyNumber(object) ## S4 method for signature 'MultiBatchCopyNumber' copyNumber(object) ## S4 method for signature 'MultiBatchCopyNumberPooled' copyNumber(object)
object |
a |
sb <- SingleBatchModelExample cn.model <- CopyNumberModel(sb) head(copyNumber(cn.model)) ## here is an identity mapping ## Not run: mapping(cn.model) <- 1:3 identical(copyNumber(cn.model), z(cn.model)) table(copyNumber(cn.model)) ## here, we map the first two mixture components to one copy number state mapping(cn.model) <- c(1, 1, 2) table(copyNumber(cn.model)) ## End(Not run)