ratio {CNAnorm} | R Documentation |
ratio
returns the Test/Normal ratio from an object of class CNAnorm
.
ratio is corrected for GC content if gcNorm
was called.
ratio.n
returns the Test/Normal normalized ratio from an object of class CNAnorm
after normalization. Its input is ratio(object)
ratio.s
returns the Test/Normal smoothed ratio from an object of class CNAnorm
Its input is ratio(object)
ratio.s.n
returns the Test/Normal smoothed and normalized ratio
from an object of class CNAnorm
. Its input is ratio.s(object)
segMean
returns the mean of the segments as produced by DNACopy
segMean.n
returns the normalized mean of the segments
ratio(object) ratio.n(object) ratio.s(object) ratio.s.n(object) segMean(object) segMean.n(object)
object |
An object of Class |
A numeric vector
Stefano Berri <s.berri@leeds.ac.uk>
gcNorm
, CNAnorm-class
, DNAcopy
data(LS041) CN <- dataFrame2object(LS041) ratio.original <- ratio(CN) CN.gcNorm <- gcNorm(CN, exclude = c("chrX", "chrY", "chrM")) ratio.gc.corrected <- ratio(CN.gcNorm)