printEffects {CGEN} | R Documentation

## Print an effects table

### Description

Prints an object returned from `snp.logistic` or `snp.matched`

### Usage

     printEffects(obj, op=NULL)

### Arguments

`obj` | The return object from `snp.logistic` or `snp.matched`. No default.
`op` | Options list with names "digits" and "method" (see details). The default is NULL.

### Details

Below are the names for the options list `op`. All names have default values if they are not specified.

- `digits` Integer: Number of significant digits to print. The default is 2.

- `method` Vector of values from "UML", "CML", "EB" or "CCL", "HCL", "CLR". The default is NULL.

### Value

Returns NULL

### See Also

`snp.effects`

### Examples

     # Use the ovarian cancer data
     data(Xdata, package="CGEN")

     # Fit using a stratification variable
     fit <- snp.logistic(Xdata, "case.control", "BRCA.status",
                         main.vars=c("oral.years", "n.children"),
                         int.vars=c("oral.years", "n.children"),
                         strata.var="ethnic.group")

     # Compute the effects
     effects <- snp.effects(fit, "oral.years", var.levels=c(0, 2, 3))

     printEffects(effects)

[Package CGEN version 3.20.0 Index]