get_beta_data {CEMiTool} | R Documentation |
This function takes the input parameters from find_modules and calculates the WGCNA soft-threshold parameters and returns them.
get_beta_data(cem, ...) ## S4 method for signature 'CEMiTool' get_beta_data(cem, network_type = "unsigned", cor_function = "cor", cor_method = "pearson", verbose = FALSE)
cem |
A CEMiTool object containing expression data |
... |
Optional parameters. |
network_type |
A character string indicating to use either "unsigned"
(default) or "signed" networks. Default |
cor_function |
A character string indicating the correlation function
to be used. Default |
cor_method |
A character string indicating which correlation
coefficient is to be computed. Default |
verbose |
Logical. If |
A list containing the soft-threshold selected by WGCNA and scale-free model parameters
# Get example expression data data(expr0) # Initialize new CEMiTool object with expression data cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE) # Get beta data beta_data <- get_beta_data(cem)