get_cemitool_r2_beta {CEMiTool} | R Documentation |
This function takes a CEMiTool object with beta data and returns a vector containing the chosen beta and corresponding R squared value.
get_cemitool_r2_beta(cem, ...) ## S4 method for signature 'CEMiTool' get_cemitool_r2_beta(cem, eps = 0.1)
cem |
A CEMiTool object containing the fit_indices slot |
... |
Optional parameters. |
eps |
A value indicating the accepted interval between successive values of R squared to use to calculate the selected beta. Default: 0.1. |
A vector containing R squared value and the chosen beta parameter.
# Get example expression data data(expr0) # Initialize new CEMiTool object with expression data cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE) # Get modules and beta data cem <- find_modules(cem) # Get CEMiTool R2 and beta values get_cemitool_r2_beta(cem)