trackBTree {BubbleTree} | R Documentation |
get the geom_segment location of the BTree track
trackBTree(.Object, rbd1, rbd2, is.matched = FALSE, min.srcSize = 0.5, min.trtSize = 0.1, min.overlap = 1e+05) ## S4 method for signature 'BTreePlotter' trackBTree(.Object, rbd1, rbd2, is.matched = FALSE, min.srcSize = 0.5, min.trtSize = 0.1, min.overlap = 1e+05)
.Object |
the object |
rbd1 |
rbd one |
rbd2 |
rbd two |
is.matched |
is it matched |
min.srcSize |
min src size |
min.trtSize |
min trt size |
min.overlap |
min overlap |
geom_segment location of BTree track
load(system.file("data", "allCall.lst.RData", package="BubbleTree")) btreeplotter <- new("BTreePlotter", max.ploidy=5, max.size=10) nn <- "sam2" rbd1 <- allCall.lst[[nn]]@rbd rbd2 <- allCall.lst[[nn]]@rbd.adj arrows <- trackBTree(btreeplotter, rbd1, rbd2, min.srcSize=0.01, min.trtSize=0.01) btree <- drawBTree(btreeplotter, rbd1) + drawBubbles(btreeplotter, rbd2, "gray80") + arrows