AnalysisResults-class {ASICS}R Documentation

Class AnalysisResults

Description

Objects of class AnalysisResults contains results of analyses performed with the functions pca, oplsda and kruskalWallis.

Slots

type.analysis

Name of the analysis (e.g., "PCA", "OPLS-DA", ...).

type.data

Type of data used for the analyses (e.g., "quantification", "buckets"...).

dataset

The object of type SummarizedExperiment used for the analysis.

results

Results of the analysis. Can be a data frame for test results or an object of class opls from ropls for PCA and OPLS-DA.

best.model

Best model (only for OPLS-DA analyses).

cv.error

Cross validation error (only for OPLS-DA analyses).

mean.by.group

Data frame with means by group and a variable indicating if there is a significant difference between groups for tests and if the VIP associated to the variable is superior to the given threshold for OPLS-DA.

Methods

Multiple methods can be applied on AnalysisResults objects.


[Package ASICS version 2.0.1 Index]