rCGH-package | Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data |
Accessors | '"rCGH"' Accessor Functions |
adjustSignal | Array-based CGH Preprocessing |
adjustSignal-method | Array-based CGH Preprocessing |
adjustSignal-methods | Array-based CGH Preprocessing |
agilentDB | aCGH Agilent Probes GC Fraction |
AllAccessors | '"rCGH"' Accessor Functions |
byGeneTable | Converting a Segmentation Table Into a By-Gene Table |
EMnormalize | Genomic Profile Centralization |
EMnormalize-method | Genomic Profile Centralization |
EMnormalize-methods | Genomic Profile Centralization |
getCNset | '"rCGH"' Accessor Functions |
getCNset-method | '"rCGH"' Accessor Functions |
getCNset-methods | '"rCGH"' Accessor Functions |
getInfo | '"rCGH"' Accessor Functions |
getInfo-method | '"rCGH"' Accessor Functions |
getInfo-methods | '"rCGH"' Accessor Functions |
getParam | '"rCGH"' Accessor Functions |
getParam-method | '"rCGH"' Accessor Functions |
getParam-methods | '"rCGH"' Accessor Functions |
getSegTable | '"rCGH"' Accessor Functions |
getSegTable-method | '"rCGH"' Accessor Functions |
getSegTable-methods | '"rCGH"' Accessor Functions |
hg18 | Hg18 Chromosome Lengths and Centromere Locations |
hg19 | Hg19 Chromosome Lengths and Centromere Locations |
hg38 | Hg38 Chromosome Lengths and Centromere Locations |
multiplot | Static Genomic Profile and LOH Visualization |
multiplot-method | Static Genomic Profile and LOH Visualization |
multiplot-methods | Static Genomic Profile and LOH Visualization |
plotDensity | Visualizing the Log2Ratios Density and Centralization Decision |
plotDensity-method | Visualizing the Log2Ratios Density and Centralization Decision |
plotDensity-methods | Visualizing the Log2Ratios Density and Centralization Decision |
plotLOH | Allelic Differences Visualization |
plotLOH-method | Allelic Differences Visualization |
plotLOH-methods | Allelic Differences Visualization |
plotProfile | Static Genomic Profile Visualization |
plotProfile-method | Static Genomic Profile Visualization |
plotProfile-methods | Static Genomic Profile Visualization |
rCGH | Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data |
rCGH-Agilent-class | Class '"rCGH-Agilent"' |
rCGH-class | Class '"rCGH"' |
rCGH-cytoScan-class | Class '"rCGH-cytoScan"' |
rCGH-generic-class | Class '"rCGH-generic"' |
rCGH-oncoScan-class | Class '"rCGH-oncoScan"' |
rCGH-SNP6-class | Class '"rCGH-SNP6"' |
readAffyCytoScan | Affymetrix CytoScanHD '"rCGH-cytoScan"' Constructor |
readAffyOncoScan | Affymetrix OncoScan '"rCGH-oncoScan"' Constructor |
readAffySNP6 | Affymetrix SNP6 '"rCGH-SNP6"' Constructor |
readAgilent | Agilent Dual-Color Hybridization '"rCGH-Agilent"' Constructor. |
readGeneric | Generic rCGH object '"rCGH-generic"' Constructor |
recenter | Recentering a Genomic Profile |
recenter<- | Recentering a Genomic Profile |
recenter<--method | Recentering a Genomic Profile |
recenter<--methods | Recentering a Genomic Profile |
segmentCGH | Genomic Profile Segmentation |
segmentCGH-method | Genomic Profile Segmentation |
segmentCGH-methods | Genomic Profile Segmentation |
setInfo | Adding Information In An Object Of Class '"rCGH"' |
setInfo<- | Adding Information In An Object Of Class '"rCGH"' |
setInfo<--method | Adding Information In An Object Of Class '"rCGH"' |
setInfo<--methods | Adding Information In An Object Of Class '"rCGH"' |
show-method | 'show' '"rCGH"' |
show-methods | 'show' '"rCGH"' |
view | Interactive Genomic Profile Visualization |
view-method | Interactive Genomic Profile Visualization |
view-methods | Interactive Genomic Profile Visualization |