Convert miRNA Names to Different miRBase Versions


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Documentation for package ‘miRNAmeConverter’ version 1.12.0

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miRNAmeConverter-package MiRNANameConverter constructor
assessMiRNASwappingMIMAT Check if given miRNA names can be assigned to unique MIMAT accessions among all versions
assessVersion Assess miRBase version
assessVersion-method Assess miRBase version
checkMiRNAName Check miRNA names for validity
checkMiRNAName-method Check miRNA names for validity
currentVersion Get current version
currentVersion-method Get current version
currentVersion<- Set current version
example.miRNAs miRNA names.
miRNAmeConverter MiRNANameConverter constructor
MiRNANameConverter Instantiate from MiRNANameConverter class
MiRNANameConverter-method MiRNANameConverter constructor
nOrganisms Get number of organisms
nOrganisms-method Get number of organisms
nOrganisms<- Set number of organisms
nTotalEntries Get total number database entries
nTotalEntries-method Get total number database entries
nTotalEntries<- Set total number database entries
saveResults Save miRNA translation results
saveResults-method Save miRNA translation results
show-method Show-method
translateMiRNAName Translate miRNA name
translateMiRNAName-method Translate miRNA name
validOrganisms Get valid organisms
validOrganisms-method Get valid organisms
validOrganisms<- Set valid organisms
validVersions Get valid versions
validVersions-method Get valid versions
validVersions<- Set valid versions