Plot customizable linear genomes displaying arbitrary data


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Documentation for package ‘karyoploteR’ version 1.10.5

Help Pages

addGeneNames addGeneNames
autotrack autotrack
colByChr colByChr
colByRegion colByRegion
darker darker
filterParams filterParams
getChromosomeNamesBoundingBox getChromosomeNamesBoundingBox
getCytobandColors getCytobandColors
getCytobands getCytobands
getDataPanelBoundingBox getDataPanelBoundingBox
getDefaultPlotParams getDefaultParameters
getMainTitleBoundingBox getMainTitleBoundingBox
getTextSize getTextSize
getVariantsColors getVariantsColors
is.color is.color
kpAbline kpAbline
kpAddBaseNumbers kpAddBaseNumbers
kpAddChromosomeNames kpAddChromosomeNames
kpAddChromosomeSeparators kpAddChromosomeSeparators
kpAddCytobandLabels kpAddCytobandLabels
kpAddCytobands kpAddCytobands
kpAddCytobandsAsLine kpAddCytobandsAsLine
kpAddLabels kpAddLabels
kpAddMainTitle kpAddMainTitle
kpArea kpArea
kpArrows kpArrows
kpAxis kpAxis
kpBars kpBars
kpDataBackground kpDataBackground
kpHeatmap kpHeatmap
kpLines kpLines
kpPlotBAMCoverage kpPlotBAMCoverage
kpPlotBAMDensity kpPlotBAMDensity
kpPlotBigWig kpPlotBigWig
kpPlotCoverage kpCoverage
kpPlotDensity kpPlotDensity
kpPlotGenes kpPlotGenes
kpPlotLinks kpPlotLinks
kpPlotLoess kpPlotLoess
kpPlotMarkers kpPlotMarkers
kpPlotNames kpPlotNames
kpPlotRainfall kpPlotRainfall
kpPlotRegions kpPlotRegions
kpPlotRibbon kpPlotRibbon
kpPlotTranscripts kpPlotTranscripts
kpPoints kpPoints
kpPolygon kpPolygon
kpRect kpRect
kpSegments kpSegments
kpText kpText
lighter lighter
makeGenesDataFromTxDb makeGenesDataFromTxDb
mergeTranscripts mergeTranscripts
plotDefaultPlotParams plotDefaultPlotParameters
plotKaryotype plotKaryotype
prepareParameters2 prepareParameters2
prepareParameters4 prepareParameters4
processClipping processClipping
transparent transparent