Fishpond: differential transcript and gene expression with inferential replicates


[Up] [Top]

Documentation for package ‘fishpond’ version 1.0.2

Help Pages

deswish deswish: DESeq2-apeglm With Inferential Samples Helps
labelKeep Label rows to keep based on minimal count
makeSimSwishData Make simulated data for swish for examples/testing
plotInfReps Plot inferential replicates for a gene or transcript
plotMASwish MA plot
scaleInfReps Scale inferential replicate counts
swish swish: SAMseq With Inferential Samples Helps