xPierEvidence | R Documentation |
xPierEvidence
is supposed to extract evidence from a list of
pNode objects, in terms of seed genes under genetic influence.
xPierEvidence(list_pNode, target.query = NULL, verbose = TRUE)
list_pNode |
a list of "pNode" objects or a "pNode" object |
target.query |
which gene is in query. If NULL, all genes will be queried |
verbose |
logical to indicate whether the messages will be displayed in the screen. By default, it sets to true for display |
a data frame of nPair X 5 containing Gene-SNP pair info per context, where the 6 columns are "Gene" (seed genes), "SNP" (dbSNP), "Score" (an SNP's genetic influential score on a seed gene), "Context" (predictors), "Flag" (indicative of Lead SNPs or LD SNPs), and "Pval" (the SNP p-value)
none
xPierSNPsAdv
## Not run: # Load the library library(Pi) ## End(Not run) RData.location <- "http://galahad.well.ox.ac.uk/bigdata" ## Not run: df_Gene2SNP <- xPierEvidence(ls_pNode) ## End(Not run)