HDF5 backend for DelayedArray objects

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Documentation for package ‘HDF5Array’ version 1.12.3

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appendDatasetCreationToHDF5DumpLog HDF5 dump management
chunkdim-method HDF5ArraySeed objects
chunkdim-method TENxMatrixSeed objects
chunkdim-method Write an array-like object to an HDF5 file
class:HDF5Array HDF5 datasets as DelayedArray objects
class:HDF5ArraySeed HDF5ArraySeed objects
class:HDF5Matrix HDF5 datasets as DelayedArray objects
class:HDF5RealizationSink Write an array-like object to an HDF5 file
class:TENxMatrix 10x Genomics datasets as DelayedMatrix objects
class:TENxMatrixSeed TENxMatrixSeed objects
class:TENxRealizationSink Write a matrix-like object as an HDF5-based sparse matrix
close-method Write a matrix-like object as an HDF5-based sparse matrix
coerce-method HDF5 datasets as DelayedArray objects
coerce-method Write an array-like object to an HDF5 file
coerce-method Write a matrix-like object as an HDF5-based sparse matrix
DelayedArray-method HDF5 datasets as DelayedArray objects
DelayedArray-method 10x Genomics datasets as DelayedMatrix objects
dim-method HDF5ArraySeed objects
dim-method TENxMatrixSeed objects
dimnames-method TENxMatrixSeed objects
dimnames-method Write an array-like object to an HDF5 file
dimnames-method Write a matrix-like object as an HDF5-based sparse matrix
dump-management HDF5 dump management
extractNonzeroDataByCol 10x Genomics datasets as DelayedMatrix objects
extractNonzeroDataByCol-method 10x Genomics datasets as DelayedMatrix objects
extractNonzeroDataByCol-method TENxMatrixSeed objects
extract_array-method HDF5ArraySeed objects
extract_array-method TENxMatrixSeed objects
extract_sparse_array-method TENxMatrixSeed objects
getHDF5DumpChunkDim HDF5 dump management
getHDF5DumpChunkLength HDF5 dump management
getHDF5DumpChunkShape HDF5 dump management
getHDF5DumpCompressionLevel HDF5 dump management
getHDF5DumpDir HDF5 dump management
getHDF5DumpFile HDF5 dump management
getHDF5DumpName HDF5 dump management
get_h5mread_returned_type An alternative to 'rhdf5::h5read'
h5mread An alternative to 'rhdf5::h5read'
HDF5-dump-management HDF5 dump management
HDF5Array HDF5 datasets as DelayedArray objects
HDF5Array-class HDF5 datasets as DelayedArray objects
HDF5ArraySeed HDF5ArraySeed objects
HDF5ArraySeed-class HDF5ArraySeed objects
HDF5Matrix HDF5 datasets as DelayedArray objects
HDF5Matrix-class HDF5 datasets as DelayedArray objects
HDF5RealizationSink Write an array-like object to an HDF5 file
HDF5RealizationSink-class Write an array-like object to an HDF5 file
is_sparse-method TENxMatrixSeed objects
loadHDF5SummarizedExperiment Save/load an HDF5-based SummarizedExperiment object
lsHDF5DumpFile HDF5 dump management
matrixClass-method HDF5 datasets as DelayedArray objects
path-method HDF5ArraySeed objects
path-method TENxMatrixSeed objects
path<--method HDF5ArraySeed objects
path<--method TENxMatrixSeed objects
quickResaveHDF5SummarizedExperiment Save/load an HDF5-based SummarizedExperiment object
read_sparse_block-method 10x Genomics datasets as DelayedMatrix objects
read_sparse_block-method TENxMatrixSeed objects
saveHDF5SummarizedExperiment Save/load an HDF5-based SummarizedExperiment object
setHDF5DumpChunkLength HDF5 dump management
setHDF5DumpChunkShape HDF5 dump management
setHDF5DumpCompressionLevel HDF5 dump management
setHDF5DumpDir HDF5 dump management
setHDF5DumpFile HDF5 dump management
setHDF5DumpName HDF5 dump management
show-method TENxMatrixSeed objects
showHDF5DumpLog HDF5 dump management
sparsity 10x Genomics datasets as DelayedMatrix objects
sparsity-method 10x Genomics datasets as DelayedMatrix objects
sparsity-method TENxMatrixSeed objects
TENxMatrix 10x Genomics datasets as DelayedMatrix objects
TENxMatrix-class 10x Genomics datasets as DelayedMatrix objects
TENxMatrixSeed TENxMatrixSeed objects
TENxMatrixSeed-class TENxMatrixSeed objects
TENxRealizationSink Write a matrix-like object as an HDF5-based sparse matrix
TENxRealizationSink-class Write a matrix-like object as an HDF5-based sparse matrix
type-method Write an array-like object to an HDF5 file
type-method Write a matrix-like object as an HDF5-based sparse matrix
writeHDF5Array Write an array-like object to an HDF5 file
writeTENxMatrix Write a matrix-like object as an HDF5-based sparse matrix
write_block-method Write an array-like object to an HDF5 file
write_block-method Write a matrix-like object as an HDF5-based sparse matrix
write_sparse_block-method Write a matrix-like object as an HDF5-based sparse matrix