Genomic Visualizations in R


[Up] [Top]

Documentation for package ‘GenVisR’ version 1.16.1

Help Pages

GenVisR-package GenVisR
.getData_Lolliplot Method getData
.getData_MutSpectra Method getData
.getData_Rainfall Method getData
.getData_waterfall Method getData
brcaMAF Truncated BRCA MAF file
Clinical Class Clinical
Clinical-class Class Clinical
cnFreq Construct copy-number frequency plot
cnSpec Construct copy-number cohort plot
cnView Construct copy-number single sample plot
compIdent Construct identity snp comparison plot
covBars Construct an overall coverage cohort plot
cytoGeno Cytogenetic banding dataset
drawPlot Method drawPlot
drawPlot-method Method drawPlot
genCov Construct a region of interest coverage plot
geneViz Construct a gene-features plot
GenVisR GenVisR
getData Method getData
getData-method Method getData
getDescription Method getDescription
getDescription-method Method getDescription
getGrob Method getGrob
getGrob-method Method getGrob
getHeader Method getHeader
getHeader-method Method getHeader
getMeta Method getMeta
getMeta-method Method getMeta
getMutation Method getMutation
getMutation-method Method getMutation
getPath Method getPath
getPath-method Method getPath
getPosition Method getPosition
getPosition-method Method getPosition
getSample Method getSample
getSample-method Method getSample
getVersion Method getVersion
getVersion-method Method getVersion
GMS Class GMS
GMS-class Class GMS
GMS_v4 Class GMS_v4
GMS_v4-class Class GMS_v4
GMS_Virtual-class Class GMS_Virtual
HCC1395_Germline Germline Calls
HCC1395_N Normal BAM
HCC1395_T Tumor BAM
hg19chr hg19 chromosome boundaries
ideoView Construct an ideogram
lohSpec Plot LOH data
lohView Construct LOH chromosome plot
Lolliplot Class Lolliplot
lolliplot Construct a lolliplot
Lolliplot-class Class Lolliplot
lolliplot_AA2sidechain Convert AA to side chain classification
lolliplot_buildMain Construct Lolliplot
LucCNseg Truncated CN segments
MutationAnnotationFormat Class MutationAnnotationFormat
MutationAnnotationFormat-class Class MutationAnnotationFormat
MutationAnnotationFormat_v1.0 Class MutationAnnotationFormat_v1.0
MutationAnnotationFormat_v1.0-class Class MutationAnnotationFormat_v1.0
MutationAnnotationFormat_v2.0 Class MutationAnnotationFormat_v2.0
MutationAnnotationFormat_v2.0-class Class MutationAnnotationFormat_v2.0
MutationAnnotationFormat_v2.1 Class MutationAnnotationFormat_v2.1
MutationAnnotationFormat_v2.1-class Class MutationAnnotationFormat_v2.1
MutationAnnotationFormat_v2.2 Class MutationAnnotationFormat_v2.2
MutationAnnotationFormat_v2.2-class Class MutationAnnotationFormat_v2.2
MutationAnnotationFormat_v2.3 Class MutationAnnotationFormat_v2.3
MutationAnnotationFormat_v2.3-class Class MutationAnnotationFormat_v2.3
MutationAnnotationFormat_v2.4 Class MutationAnnotationFormat_v2.4
MutationAnnotationFormat_v2.4-class Class MutationAnnotationFormat_v2.4
MutationAnnotationFormat_Virtual-class Class MutationAnnotationFormat_Virtual
MutSpectra Class MutSpectra
MutSpectra-class Class MutSpectra
PIK3CA Subset MAF file for PIK3CA gene
Rainfall Class Rainfall
Rainfall-class Class Rainfall
SNPloci Identity snps
TvTi Construct transition-transversion plot
VEP Class VEP
VEP-class Class VEP
VEP_v88 Class VEP_v88
VEP_v88-class Class VEP_v88
VEP_Virtual-class Class VEP_Virtual
Waterfall Class Waterfall
waterfall Construct a waterfall plot
Waterfall-class Class Waterfall
writeData Method writeData
writeData,GMS_Virtual Method writeData
writeData,MutationAnnotationFormat_Virtual Method writeData
writeData,VEP_Virtual Method writeData
writeData-method Method writeData