baseGLMnet |
Prediction by generalized linear regression models |
baseModel |
Base supervised machine learning models for prediction |
baseRandForest |
Prediction by random forest |
baseSVM |
Prediction by SVM |
BioMM |
BioMM end-to-end prediction |
BioMMreconData |
Reconstruct stage-2 data by supervised machine learning prediction |
BioMMstage1pca |
Reconstruct stage-2 data by PCA |
BioMMstage2pred |
Prediction performance for stage-2 data using supervised machine learning |
classifiACC |
Compute the classification accuracy |
getDataAfterFS |
Return the data after feature selection |
getMetrics |
Compute the evaluation metrics |
omics2chrlist |
Map individual probes into chromosome |
omics2genelist |
Map individual probes into gene |
omics2pathlist |
Map individual probes into pathway |
plotRankedFeature |
Plot top outcome-associated features |
plotVarExplained |
Plot data summary statistics |
predByBS |
Bootstrap resampling prediction via supervised machine learning with feature selection |
predByCV |
Cross validation prediction by supervised machine learning and feature selection |
predByFS |
Prediction by supervised machine learning along with feature selection |