tRNAscanImport

DOI: 10.18129/B9.bioc.tRNAscanImport    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see tRNAscanImport.

Imports a tRNAscan-SE result file as GRanges object

Bioconductor version: 3.8

The package imports the result of tRNAscan-SE as a GRanges object.

Author: Felix GM Ernst [aut, cre]

Maintainer: Felix GM Ernst <felix.gm.ernst at outlook.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("tRNAscanImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAscanImport")

 

HTML	R Script	tRNAscanImport
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Preprocessing, Software, Visualization, WorkflowStep
Version	1.2.0
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5), GenomicRanges, tRNA
Imports	methods, assertive, stringr, BiocGenerics, Biostrings, S4Vectors, GenomeInfoDb, rtracklayer
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, ggplot2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	tRNA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tRNAscanImport_1.2.0.tar.gz
Windows Binary	tRNAscanImport_1.2.0.zip
Mac OS X 10.11 (El Capitan)	tRNAscanImport_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tRNAscanImport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tRNAscanImport
Package Short Url	http://bioconductor.org/packages/tRNAscanImport/
Package Downloads Report	Download Stats