roar

DOI: 10.18129/B9.bioc.roar    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see roar.

Identify differential APA usage from RNA-seq alignments

Bioconductor version: 3.8

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("roar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("roar")

 

PDF	R Script	Identify differential APA usage from RNA-seq alignments
PDF		Reference Manual
Text		NEWS

Details

biocViews	HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription
Version	1.18.0
In Bioconductor since	BioC 2.14 (R-3.1) (5 years)
License	GPL-3
Depends	R (>= 3.0.1)
Imports	methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb
LinkingTo
Suggests	RNAseqData.HNRNPC.bam.chr14, testthat
SystemRequirements
Enhances
URL	https://github.com/vodkatad/roar/
Depends On Me
Imports Me	XBSeq
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	roar_1.18.0.tar.gz
Windows Binary	roar_1.18.0.zip
Mac OS X 10.11 (El Capitan)	roar_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/roar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/roar
Package Short Url	http://bioconductor.org/packages/roar/
Package Downloads Report	Download Stats